Wu3857: /* Reference */

2019-08-19T23:06:43Z

‎Reference

Wu3857: Created page with "{| align="left" | TOC |} {{#invoke:InfoboxforTarget|run|TUBB2B|[https://www.uniprot.org/uniprot/Q6B856 Q6B856]|Bos taurus|Cys303, Cys239, Cys354|[http://pfam.xfam.org/..."

2019-07-30T21:37:42Z

Created page with "{| align="left" | __TOC__ |} {{#invoke:InfoboxforTarget|run|TUBB2B|[https://www.uniprot.org/uniprot/Q6B856 Q6B856]|Bos taurus|Cys303, Cys239, Cys354|[http://pfam.xfam.org/..."

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{{#invoke:InfoboxforTarget|run|TUBB2B|[https://www.uniprot.org/uniprot/Q6B856 Q6B856]|Bos taurus|Cys303, Cys239, Cys354|[http://pfam.xfam.org/family/PF00091 Tubulin family]|[[:Category:Tubulin beta-2B chain (Bos taurus)|Ligand list]]|Structural protein}}
==Summary==

===Protein Function ===
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (From Uniprot) 
Tubulin in molecular biology can refer either to the tubulin protein superfamily of globular proteins, or one of the member proteins of that superfamily. The tubulin superfamily contains six families of tubulins (alpha-, beta-, gamma-, delta-, epsilon and zeta-tubulins). Tubulin is also used to specifically refer to α-tubulin and β-tubulin, the proteins that make up microtubules in eukaryotic cells. Each has a molecular weight of approximately 50,000 Daltons. Tubulin was long thought to be specific to eukaryotes. Recently, however, the prokaryotic cell division protein FtsZ was shown to be related to tubulin. 
The Tubulin/FtsZ family, GTPase domain is an evolutionary conserved protein domain. This GTPase protein domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division that forms part of a ring in the middle of the dividing cell that is required for constriction of the cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro, and is ubiquitous in bacteria and archaea. 
Microtubules are assembled from dimers of α- and β-tubulin. These subunits are slightly acidic with an isoelectric point between 5.2 and 5.8. To form microtubules, the dimers of α- and β-tubulin bind to GTP and assemble onto the (+) ends of microtubules while in the GTP-bound state. The β-tubulin subunit is exposed on the plus end of the microtubule while the α-tubulin subunit is exposed on the minus end. After the dimer is incorporated into the microtubule, the molecule of GTP bound to the β-tubulin subunit eventually hydrolyzes into GDP through inter-dimer contacts along the microtubule protofilament. Whether the β-tubulin member of the tubulin dimer is bound to GTP or GDP influences the stability of the dimer in the microtubule. Dimers bound to GTP tend to assemble into microtubules, while dimers bound to GDP tend to fall apart; thus, this GTP cycle is essential for the dynamic instability of the microtubule. (From Wiki)
 

===Cys Function & Property===
These residues are all very close to the interface. 

* Hydrophobic property:
:[[File:505-hydro.png||600px]]
* SASA：
:Cys239: 5.498 A^2
:Cys303: 5.108 A^2
:Cys354: 1.524 A^2

==Protein Sequence==

MREIVHIQAG QCGNQIGAKF WEVISDEHGI DPTGSYHGDS DLQLERINVY 
YNEATGNKYV PRAILVDLEP GTMDSVRSGP FGQIFRPDNF VFGQSGAGNN 
WAKGHYTEGA ELVDSVLDVV RKESESCDCL QGFQLTHSLG GGTGSGMGTL 
LISKIREEYP DRIMNTFSVM PSPKVSDTVV EPYNATLSVH QLVENTDETY 
CIDNEALYDI CFRTLKLTTP TYGDLNHLVS ATMSGVTT'''C'''L RFPGQLNADL 
RKLAVNMVPF PRLHFFMPGF APLTSRGSQQ YRALTVPELT QQMFDSKNMM 
AA'''C'''DPRHGRY LTVAAIFRGR MSMKEVDEQM LNVQNKNSSY FVEWIPNNVK 
TAV'''C'''DIPPRG LKMSATFIGN STAIQELFKR ISEQFTAMFR RKAFLHWYTG 
EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEQGEFEEEE GEDEA 


==Structural Information==
*Known structure with covalent ligand: 
:Unknown 

*Protein structure:
[[File:505.png|center|800px]]

==Related Pathway==
*[https://www.genome.jp/kegg-bin/show_pathway?ko04145 Phagosome] 
*[https://www.genome.jp/kegg-bin/show_pathway?ko04540 Gap junction] 
*[https://www.genome.jp/kegg-bin/show_pathway?ko05130 Pathogenic Escherichia coli infection] 

==Experimental Evidence==
:LC-MS/MS, Tryptic Digest, Western blot, Isotope Labeling

==Reference==
# Stewart B J, Doorn J A, Petersen D R. '''Residue-specific adduction of tubulin by 4-hydroxynonenal and 4-oxononenal causes cross-linking and inhibits polymerization[J].''' Chemical research in toxicology, 2007, 20(8): 1111-1119. [https://www.ncbi.nlm.nih.gov/pubmed/?term=17630713 17630713] 
# Bai R, Pei X F, Boyé O, et al. '''Identification of cysteine 354 of β-tubulin as part of the binding site for the A ring of colchicine[J].''' Journal of Biological Chemistry, 1996, 271(21): 12639-12645. [https://www.ncbi.nlm.nih.gov/pubmed/?term=8647876 8647876] 
# Bai R L, Lin C M, Yen N N, et al. '''Identification of the cysteine residue of. beta.-tubulin alkylated by the antimitotic agent 2, 4-dichlorobenzyl thiocyanate, facilitated by separatio of the protein subunits of tubulin by hydrophobic column chromatography[J].''' Biochemistry, 1989, 28(13): 5606-5612. [https://www.ncbi.nlm.nih.gov/pubmed/?term=2775724 2775724] 

[[Category:Targets|Targets]]
[[Category:Bos taurus|Bos taurus]]
[[Category:Structural protein|Structural protein]]
[[Category:Tubulin family|Tubulin family]]
[[Category:Phagosome|Phagosome]]
[[Category:Gap junction|Gap junction]]
[[Category:Pathogenic Escherichia coli infection|Pathogenic Escherichia coli infection]]

@@ Line 55: / Line 55: @@
 # Bai R L, Lin C M, Yen N N, et al. '''Identification of the cysteine residue of. beta.-tubulin alkylated by the antimitotic agent 2, 4-dichlorobenzyl thiocyanate, facilitated by separatio of the protein subunits of tubulin by hydrophobic column chromatography[J].''' Biochemistry, 1989, 28(13): 5606-5612. [https://www.ncbi.nlm.nih.gov/pubmed/?term=2775724 2775724]<br/>
-[[Category:Targets|Targets]]
+[[Category:Targets]]
-[[Category:Bos taurus|Bos taurus]]
+[[Category:Bos taurus]]
-[[Category:Structural protein|Structural protein]]
+[[Category:Structural protein]]
-[[Category:Tubulin family|Tubulin family]]
+[[Category:Tubulin family]]
-[[Category:Phagosome|Phagosome]]
+[[Category:Phagosome]]
-[[Category:Gap junction|Gap junction]]
+[[Category:Gap junction]]
-[[Category:Pathogenic Escherichia coli infection|Pathogenic Escherichia coli infection]]
+[[Category:Pathogenic Escherichia coli infection]]

Tubulin beta-2B chain (Bos taurus) - Revision history

Wu3857: /* Reference */

Wu3857: Created page with "{| align="left" | __TOC__ |} {{#invoke:InfoboxforTarget|run|TUBB2B|[https://www.uniprot.org/uniprot/Q6B856 Q6B856]|Bos taurus|Cys303, Cys239, Cys354|[http://pfam.xfam.org/..."

Wu3857: Created page with "{| align="left" | TOC |} {{#invoke:InfoboxforTarget|run|TUBB2B|[https://www.uniprot.org/uniprot/Q6B856 Q6B856]|Bos taurus|Cys303, Cys239, Cys354|[http://pfam.xfam.org/..."