Tubulin alpha-1B chain (Bos taurus) - Revision history

Wu3857: /* Reference */

2019-08-19T23:18:07Z

‎Reference

Wu3857: /* Protein Function */

2019-07-30T21:24:54Z

‎Protein Function

Wu3857: /* Protein Function */

2019-07-30T21:24:38Z

‎Protein Function

Wu3857: Created page with "{| align="left" | TOC |} {{#invoke:InfoboxforTarget|run|TUBA1B, Tubulin K-alpha-1|[https://www.uniprot.org/uniprot/P81947 P81947]|Bos taurus|Cys347, Cys376|[http://pfa..."

2019-07-30T21:23:42Z

Created page with "{| align="left" | __TOC__ |} {{#invoke:InfoboxforTarget|run|TUBA1B, Tubulin K-alpha-1|[https://www.uniprot.org/uniprot/P81947 P81947]|Bos taurus|Cys347, Cys376|[http://pfa..."

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{| align="left"
| __TOC__
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{{#invoke:InfoboxforTarget|run|TUBA1B, Tubulin K-alpha-1|[https://www.uniprot.org/uniprot/P81947 P81947]|Bos taurus|Cys347, Cys376|[http://pfam.xfam.org/family/PF00091 Tubulin family]|[[:Category:Tubulin alpha-1B chain (Bos taurus)|Ligand list]]|Structural protein}}
==Summary==

===Protein Function ===
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. ([)From Uniprot) 
Tubulin (tubul- + -in) in molecular biology can refer either to the tubulin protein superfamily of globular proteins, or one of the member proteins of that superfamily. The tubulin superfamily contains six families of tubulins (alpha-, beta-, gamma-, delta-, epsilon and zeta-tubulins). Tubulin is also used to specifically refer to α-tubulin and β-tubulin, the proteins that make up microtubules in eukaryotic cells. Each has a molecular weight of approximately 50,000 Daltons. Tubulin was long thought to be specific to eukaryotes. Recently, however, the prokaryotic cell division protein FtsZ was shown to be related to tubulin. 
The Tubulin/FtsZ family, GTPase domain is an evolutionary conserved protein domain. This GTPase protein domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division that forms part of a ring in the middle of the dividing cell that is required for constriction of the cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro, and is ubiquitous in bacteria and archaea. 
Microtubules are assembled from dimers of α- and β-tubulin. These subunits are slightly acidic with an isoelectric point between 5.2 and 5.8. To form microtubules, the dimers of α- and β-tubulin bind to GTP and assemble onto the (+) ends of microtubules while in the GTP-bound state. The β-tubulin subunit is exposed on the plus end of the microtubule while the α-tubulin subunit is exposed on the minus end. After the dimer is incorporated into the microtubule, the molecule of GTP bound to the β-tubulin subunit eventually hydrolyzes into GDP through inter-dimer contacts along the microtubule protofilament. Whether the β-tubulin member of the tubulin dimer is bound to GTP or GDP influences the stability of the dimer in the microtubule. Dimers bound to GTP tend to assemble into microtubules, while dimers bound to GDP tend to fall apart; thus, this GTP cycle is essential for the dynamic instability of the microtubule. (From Wiki)
 

===Cys Function & Property===
Cys347 and Cys376 are close to the interface. 

* Hydrophobic property:
:[[File:504-hydro.png||600px]]
* SASA：
:Cys347: 15.164 A^2
:Cys376: 25.864 A^2

==Protein Sequence==

MRECISIHVG QAGVQIGNAC WELYCLEHGI QPDGQMPSDK TIGGGDDSFN 
TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLITGKEDAA 
NNYARGHYTI GKEIIDLVLD RIRKLADQCT GLQGFLVFHS FGGGTGSGFT 
SLLMERLSVD YGKKSKLEFS IYPAPQVSTA VVEPYNSILT THTTLEHSDC 
AFMVDNEAIY DICRRNLDIE RPTYTNLNRL ISQIVSSITA SLRFDGALNV 
DLTEFQTNLV PYPRIHFPLA TYAPVISAEK AYHEQLSVAE ITNACFEPAN 
QMVKCDPRHG KYMACCLLYR GDVVPKDVNA AIATIKTKRS IQFVDW'''C'''PTG 
FKVGINYQPP TVVPGGDLAK VQRAV'''C'''MLSN TTAIAEAWAR LDHKFDLMYA 
KRAFVHWYVG EGMEEGEFSE AREDMAALEK DYEEVGVDSV EGEGEEEGEE 
Y 


==Structural Information==
*Known structure with covalent ligand: 
:Unknown 

*Protein structure:
[[File:504.png|center|800px]]

==Related Pathway==
*[https://www.genome.jp/kegg-bin/show_pathway?ko04145 Phagosome] 
*[https://www.genome.jp/kegg-bin/show_pathway?ko04210 Apoptosis] 
*[https://www.genome.jp/kegg-bin/show_pathway?ko04530 Tight junction] 
*[https://www.genome.jp/kegg-bin/show_pathway?ko04540 Gap junction] 
*[https://www.genome.jp/kegg-bin/show_pathway?ko05130 Pathogenic Escherichia coli infection] 

==Experimental Evidence==
:LC-MS/MS, Tryptic Digest

==Reference==
# Stewart B J, Doorn J A, Petersen D R. '''Residue-specific adduction of tubulin by 4-hydroxynonenal and 4-oxononenal causes cross-linking and inhibits polymerization[J].''' Chemical research in toxicology, 2007, 20(8): 1111-1119. [https://www.ncbi.nlm.nih.gov/pubmed/?term=17630713 17630713] 

[[Category:Targets|Targets]]
[[Category:Bos taurus|Bos taurus]]
[[Category:Structural protein|Structural protein]]
[[Category:Tubulin family|Tubulin family]]
[[Category:Phagosome|Phagosome]]
[[Category:Apoptosis|Apoptosis]]
[[Category:Tight junction|Tight junction]]
[[Category:Gap junction|Gap junction]]
[[Category:Pathogenic Escherichia coli infection|Pathogenic Escherichia coli infection]]

@@ Line 55: / Line 55: @@
 # Stewart B J, Doorn J A, Petersen D R. '''Residue-specific adduction of tubulin by 4-hydroxynonenal and 4-oxononenal causes cross-linking and inhibits polymerization[J].''' Chemical research in toxicology, 2007, 20(8): 1111-1119. [https://www.ncbi.nlm.nih.gov/pubmed/?term=17630713 17630713]<br/>
-[[Category:Targets|Targets]]
+[[Category:Targets]]
-[[Category:Bos taurus|Bos taurus]]
+[[Category:Bos taurus]]
-[[Category:Structural protein|Structural protein]]
+[[Category:Structural protein]]
-[[Category:Tubulin family|Tubulin family]]
+[[Category:Tubulin family]]
-[[Category:Phagosome|Phagosome]]
+[[Category:Phagosome]]
-[[Category:Apoptosis|Apoptosis]]
+[[Category:Apoptosis]]
-[[Category:Tight junction|Tight junction]]
+[[Category:Tight junction]]
-[[Category:Gap junction|Gap junction]]
+[[Category:Gap junction]]
-[[Category:Pathogenic Escherichia coli infection|Pathogenic Escherichia coli infection]]
+[[Category:Pathogenic Escherichia coli infection]]

@@ Line 7: / Line 7: @@
 ===Protein Function ===
 Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (From Uniprot)<br/>
-Tubulin (tubul- + -in) in molecular biology can refer either to the tubulin protein superfamily of globular proteins, or one of the member proteins of that superfamily. The tubulin superfamily contains six families of tubulins (alpha-, beta-, gamma-, delta-, epsilon and zeta-tubulins). Tubulin is also used to specifically refer to α-tubulin and β-tubulin, the proteins that make up microtubules in eukaryotic cells. Each has a molecular weight of approximately 50,000 Daltons. Tubulin was long thought to be specific to eukaryotes. Recently, however, the prokaryotic cell division protein FtsZ was shown to be related to tubulin. <br/>
+Tubulin in molecular biology can refer either to the tubulin protein superfamily of globular proteins, or one of the member proteins of that superfamily. The tubulin superfamily contains six families of tubulins (alpha-, beta-, gamma-, delta-, epsilon and zeta-tubulins). Tubulin is also used to specifically refer to α-tubulin and β-tubulin, the proteins that make up microtubules in eukaryotic cells. Each has a molecular weight of approximately 50,000 Daltons. Tubulin was long thought to be specific to eukaryotes. Recently, however, the prokaryotic cell division protein FtsZ was shown to be related to tubulin. <br/>
 The Tubulin/FtsZ family, GTPase domain is an evolutionary conserved protein domain. This GTPase protein domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division that forms part of a ring in the middle of the dividing cell that is required for constriction of the cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro, and is ubiquitous in bacteria and archaea. <br/>
 Microtubules are assembled from dimers of α- and β-tubulin. These subunits are slightly acidic with an isoelectric point between 5.2 and 5.8. To form microtubules, the dimers of α- and β-tubulin bind to GTP and assemble onto the (+) ends of microtubules while in the GTP-bound state. The β-tubulin subunit is exposed on the plus end of the microtubule while the α-tubulin subunit is exposed on the minus end. After the dimer is incorporated into the microtubule, the molecule of GTP bound to the β-tubulin subunit eventually hydrolyzes into GDP through inter-dimer contacts along the microtubule protofilament. Whether the β-tubulin member of the tubulin dimer is bound to GTP or GDP influences the stability of the dimer in the microtubule. Dimers bound to GTP tend to assemble into microtubules, while dimers bound to GDP tend to fall apart; thus, this GTP cycle is essential for the dynamic instability of the microtubule. (From Wiki)

@@ Line 6: / Line 6: @@
 ===Protein Function ===
-Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. ([)From Uniprot)<br/>
+Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (From Uniprot)<br/>
 Tubulin (tubul- + -in) in molecular biology can refer either to the tubulin protein superfamily of globular proteins, or one of the member proteins of that superfamily. The tubulin superfamily contains six families of tubulins (alpha-, beta-, gamma-, delta-, epsilon and zeta-tubulins). Tubulin is also used to specifically refer to α-tubulin and β-tubulin, the proteins that make up microtubules in eukaryotic cells. Each has a molecular weight of approximately 50,000 Daltons. Tubulin was long thought to be specific to eukaryotes. Recently, however, the prokaryotic cell division protein FtsZ was shown to be related to tubulin. <br/>
 The Tubulin/FtsZ family, GTPase domain is an evolutionary conserved protein domain. This GTPase protein domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division that forms part of a ring in the middle of the dividing cell that is required for constriction of the cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro, and is ubiquitous in bacteria and archaea. <br/>

Tubulin alpha-1B chain (Bos taurus) - Revision history

Wu3857: /* Reference */

Wu3857: /* Protein Function */

Wu3857: /* Protein Function */

Wu3857: Created page with "{| align="left" | __TOC__ |} {{#invoke:InfoboxforTarget|run|TUBA1B, Tubulin K-alpha-1|[https://www.uniprot.org/uniprot/P81947 P81947]|Bos taurus|Cys347, Cys376|[http://pfa..."

Wu3857: Created page with "{| align="left" | TOC |} {{#invoke:InfoboxforTarget|run|TUBA1B, Tubulin K-alpha-1|[https://www.uniprot.org/uniprot/P81947 P81947]|Bos taurus|Cys347, Cys376|[http://pfa..."